Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. (Articolo in rivista)

Type

• Prodotto della ricerca (Classe)
• Articolo in rivista (Classe)

Label

• Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. (Articolo in rivista) (literal)

Anno

• 2013-01-01T00:00:00+01:00 (literal)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#doi

• 10.1142/S0219720013400052 (literal)

Alternative label

• Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R. (2013)
  Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets.
  in Journal of bioinformatics and computational biology (Print); World Scientific, Singapore (Singapore)
  (literal)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#autori

• Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R. (literal)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#numeroVolume

• 11 (literal)

Rivista

• Journal of bioinformatics and computational biology (Rivista)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#numeroFascicolo

• 1 (literal)

Note

• PubMe (literal)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#affiliazioni

• Bio-/Medical Informatics Department, Bielefeld University, Universitatsstr. 25,Bielefeld 33615, Germany Siberian Branch of Russian Academy of Science Novosibirsk (literal)

Titolo

• Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets. (literal)

Abstract

• The CELLmicrocosmos PathwayIntegration (CmPI) was developed to support and visualize the subcellular localization prediction of protein-related data such as protein-interaction networks. From the start it was possible to manually analyze the localizations by using an interactive table. It was, however, quite complicated to compare and analyze the different localization results derived from data integration as well as text-mining-based databases. The current software release provides a new interactive visual workflow, the Subcellular Localization Charts. As an application case, a MUPP1-related protein-protein interaction network is localized and semi-automatically analyzed. It will be shown that the workflow was dramatically improved and simplified. In addition, it is now possible to use custom protein-related data by using the SBML format and get a view of predicted protein localizations mapped onto a virtual cell model. (literal)

Editore

• World Scientific (Editore)

Prodotto di

• Interazione proteine-acidi nucleici e farmacogenomica (SV.P14.001.001) (Modulo)
• Istituto per lo studio delle macromolecole (ISMAC) (Istituto)

Autore CNR

• PATRIZIO ARRIGO (Unità di personale interno)

Insieme di parole chiave

• Keywords of "Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets." (Insieme di parole chiave)

Incoming links:

Prodotto

• Istituto per lo studio delle macromolecole (ISMAC) (Istituto)
• Interazione proteine-acidi nucleici e farmacogenomica (SV.P14.001.001) (Modulo)

Autore CNR di

• PATRIZIO ARRIGO (Unità di personale interno)

Editore di

• World Scientific (Editore)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#rivistaDi

• Journal of bioinformatics and computational biology (Rivista)

Insieme di parole chiave di

• Keywords of "Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets." (Insieme di parole chiave)