FASTPAT - A FAST AND EFFICIENT ALGORITHM FOR STRING SEARCHING IN DNA-SEQUENCES (Articolo in rivista)

Type

• Prodotto della ricerca (Classe)
• Articolo in rivista (Classe)

Label

• FASTPAT - A FAST AND EFFICIENT ALGORITHM FOR STRING SEARCHING IN DNA-SEQUENCES (Articolo in rivista) (literal)

Anno

• 1993-01-01T00:00:00+01:00 (literal)

Alternative label

• PRUNELLA, N.; LIUNI, S.; ATTIMONELLI, M.; PESOLE, G. (1993)
  FASTPAT - A FAST AND EFFICIENT ALGORITHM FOR STRING SEARCHING IN DNA-SEQUENCES
  in Computer applications in the biosciences (Print)
  (literal)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#autori

• PRUNELLA, N.; LIUNI, S.; ATTIMONELLI, M.; PESOLE, G. (literal)

Pagina inizio

• 541 (literal)

Pagina fine

• 545 (literal)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#numeroVolume

• 9 (literal)

Rivista

• Computer applications in the biosciences (Rivista)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#numeroFascicolo

• 5 (literal)

Note

• ISI Web of Science (WOS) (literal)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#affiliazioni

• Centro Studi sui Mitocondri e Metabolismo Energetico, CNR Bari Dipartimento Biochimica e Biologia Molecolare, Università di Bari (literal)

Titolo

• FASTPAT - A FAST AND EFFICIENT ALGORITHM FOR STRING SEARCHING IN DNA-SEQUENCES (literal)

Abstract

• A new string searching algorithm is Presented aimed at searching for the occurrence of character patterns in longer character texts. The algorithm, specifically designed for nucleic acid sequence data, is essentially derived from the Boyer-Moore method (Comm. ACM, 20, 762-772, 1977). Both pattern and text data are compressed so that the natural 4-letter alphabet of nucleic acid sequences is considerably enlarged. The string search starts from the last character of the pattern and proceeds in large jumps through the text to be searched. The data compression and searching algorithm allows one to avoid searching for patterns not present in the text as well as to inspect, for each pattern, all text characters until the exact match with the text is found. These considerations are supported by empirical evidence and comparisons with other methods. (literal)

Prodotto di

• Bioinformatica per la Genomica Funzionale e Comparata (SV.P18.004.001) (Modulo)

Autore CNR

• SABINO LIUNI (Unità di personale interno)

Incoming links:

Autore CNR di

• SABINO LIUNI (Unità di personale interno)

Prodotto

• Bioinformatica per la Genomica Funzionale e Comparata (SV.P18.004.001) (Modulo)

Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#rivistaDi

• Computer applications in the biosciences (Rivista)