A Comparison of Several Algorithms for the Single Individual SNP Haplotyping Reconstruction Problem (Rapporti tecnici/preprint/working paper)

Type

• Rapporti tecnici/preprint/working paper (Classe)
• Prodotto della ricerca (Classe)

Label

• A Comparison of Several Algorithms for the Single Individual SNP Haplotyping Reconstruction Problem (Rapporti tecnici/preprint/working paper) (literal)

Anno

• 2010-01-01T00:00:00+01:00 (literal)

Alternative label

• Geraci F. (2010)
  A Comparison of Several Algorithms for the Single Individual SNP Haplotyping Reconstruction Problem
  
  (literal)

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• Geraci F. (literal)

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• Technical report, 2010. (literal)

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• ABSTRACT: Motivation: Single Nucleotide Polimorfisms are the most common form of variation in human DNA. They are involved in many research fields from molecular biology to medical therapy. The technological opportunity to deal with long DNA sequences using shotgun sequencing raised the problem of fragment recombination. In this direction the Single Individual Haplotyping (SIH) problem has received more attention in last few years. Results: In this paper we survey seven of the most recent approaches to the SIH problem and make an extensive evaluation of them using real human haplotype data from the HapMap project. We also implemented a data generator tailored on current shotgun sequencing technology that use haplotypes from the HapMap project. Availability: The data we used to compare the algorithms are available on demand since we think they represent an important benckmark that can be used to easily compare novel algorithmic ideas with the state of the art. Moreover, we had to reimpl (literal)

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• Altro (literal)

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• CNR-IIT, Pisa (literal)

Titolo

• A Comparison of Several Algorithms for the Single Individual SNP Haplotyping Reconstruction Problem (literal)

Prodotto di

• Algoritmica per bioinformatica (INT.P02.003.003) (Modulo)
• Institute for informatics and telematics (IIT) (Istituto)

Autore CNR

• FILIPPO GERACI (Persona)

Insieme di parole chiave

• Keywords of "A Comparison of Several Algorithms for the Single Individual SNP Haplotyping Reconstruction Problem" (Insieme di parole chiave)

Incoming links:

Prodotto

• Institute for informatics and telematics (IIT) (Istituto)
• Algoritmica per bioinformatica (INT.P02.003.003) (Modulo)

Autore CNR di

• FILIPPO GERACI (Persona)

Insieme di parole chiave di

• Keywords of "A Comparison of Several Algorithms for the Single Individual SNP Haplotyping Reconstruction Problem" (Insieme di parole chiave)