Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences (Articolo in rivista)

Type
Label
  • Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences (Articolo in rivista) (literal)
Anno
  • 1999-01-01T00:00:00+01:00 (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#doi
  • 10.1093/nar/27.1.134 (literal)
Alternative label
  • Lanave, C.; Attimonelli, M.; De Robertis, M.; Licciulli, F.; Liuni, S.; Sbisa, E.; Saccone, C. (1999)
    Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences
    in Nucleic acids research
    (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#autori
  • Lanave, C.; Attimonelli, M.; De Robertis, M.; Licciulli, F.; Liuni, S.; Sbisa, E.; Saccone, C. (literal)
Pagina inizio
  • 134 (literal)
Pagina fine
  • 137 (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#numeroVolume
  • 27 (literal)
Rivista
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#numeroFascicolo
  • 1 (literal)
Note
  • SCImago (literal)
  • ISI Web of Science (WOS) (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#affiliazioni
  • Centro Studio Mitocondri e Metabolosmo Energetico, CNR Bari Università degli Studi Bari (literal)
Titolo
  • Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences (literal)
Abstract
  • The present paper describes AMmtDB, a database collecting the multi-aligned sequences of vertebrate mitochondrial genes coding for proteins and tRNAs, as well as the multiple alignment of the mammalian mtDNA main regulatory region (D-loop) sequences. The genes coding for proteins are multi-aligned based on the translated sequences and both the nucleotide and amino acid multi-alignments are provided. As far as the genes coding for tRNAs are concerned, the multi-alignments based on the primary and the secondary structures are both provided; for the mammalian D-loop multi-alignments we report the conserved regions of the entire D-loop (CSB1, CSB2, CSB3, the central region, ETAS1 and ETAS2) as defined by Sbisa ef al, [Gene (1997), 205, 125-140). A flatfile format for AMmtDB has been designed allowing its implementation in SRS (http://bio-www.ba.cnr.it: 8000/BioWWW/#AMMTDB). Data selected through SRS can be managed using GeneDoc or other programs for the management of multi-aligned data depending on the user's operative system. The multiple alignments have been produced with CLUSTALV and PILEUP programs and then carefully optimized manually. (literal)
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