The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution (Articolo in rivista)

Type
Label
  • The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution (Articolo in rivista) (literal)
Anno
  • 2013-01-01T00:00:00+01:00 (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#doi
  • 10.1038/ng.2586 (literal)
Alternative label
  • The International Peach Genome Initiative; Ignazio Verde; Albert G Abbott; Simone Scalabrin; Sook Jung; Shengqiang Shu; Fabio Marroni; Tatyana Zhebentyayeva; Maria Teresa Dettori; Jane Grimwood; Federica Cattonaro; Andrea Zuccolo; Laura Rossini; Jerry Jenkins; Elisa Vendramin; Lee A Meisel; Veronique Decroocq; Bryon Sosinski; Simon Prochnik; Therese Mitros; Alberto Policriti; Guido Cipriani; Luca Dondini; Stephen Ficklin; David M Goodstein; Pengfei Xuan; Cristian Del Fabbro; Valeria Aramini; Dario Copetti; Susana Gonzalez; David S Horner; Rachele Falchi; Susan Lucas; Erica Mica; Jonathan Maldonado; Barbara Lazzari; Douglas Bielenberg; Raul Pirona; Mara Miculan; Abdelali Barakat; Raffaele Testolin; Alessandra Stella; Stefano Tartarini; Pietro Tonutti; Pere Arús; Ariel Orellana; Christina Wells; Dorrie Main; Giannina Vizzotto; Herman Silva; Francesco Salamini; Jeremy Schmutz; Michele Morgante; Daniel S Rokhsar. (2013)
    The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
    in Nature genetics (Print)
    (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#autori
  • The International Peach Genome Initiative; Ignazio Verde; Albert G Abbott; Simone Scalabrin; Sook Jung; Shengqiang Shu; Fabio Marroni; Tatyana Zhebentyayeva; Maria Teresa Dettori; Jane Grimwood; Federica Cattonaro; Andrea Zuccolo; Laura Rossini; Jerry Jenkins; Elisa Vendramin; Lee A Meisel; Veronique Decroocq; Bryon Sosinski; Simon Prochnik; Therese Mitros; Alberto Policriti; Guido Cipriani; Luca Dondini; Stephen Ficklin; David M Goodstein; Pengfei Xuan; Cristian Del Fabbro; Valeria Aramini; Dario Copetti; Susana Gonzalez; David S Horner; Rachele Falchi; Susan Lucas; Erica Mica; Jonathan Maldonado; Barbara Lazzari; Douglas Bielenberg; Raul Pirona; Mara Miculan; Abdelali Barakat; Raffaele Testolin; Alessandra Stella; Stefano Tartarini; Pietro Tonutti; Pere Arús; Ariel Orellana; Christina Wells; Dorrie Main; Giannina Vizzotto; Herman Silva; Francesco Salamini; Jeremy Schmutz; Michele Morgante; Daniel S Rokhsar. (literal)
Rivista
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#affiliazioni
  • Consiglio per la Ricerca e la Sperimentazione in Agricoltura (CRA)-Centro di Ricerca per la Frutticoltura, Rome, Italy: Ignazio Verde, Maria Teresa Dettori, Elisa Vendramin, Guido Cipriani, Valeria Aramini. Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina, USA: Albert G. Abbott, Tatyana Zhebentyayeva, Abdelali Barakat. Institut National de la Recherche Agronomique (INRA), Université de Bordeaux, Unité Mixte de Recherche (UMR) 1332 Biologie du Fruit et Pathologie (BFP), BP81, Villenave d'Ornon Cedex, France: Albert G. Abbott , Veronique Decroocq. Istituto di Genomica Applicata (IGA), Udine, Italy: Simone Scalabrin, Fabio Marroni, Federica Cattonaro, Andrea Zuccolo, Alberto Policriti, Cristian Del Fabbro, Dario Copetti, Mara Miculan, Raffaele Testolin, Michele Morgante. Department of Horticulture and Landscape Architecture, Washington State University, Pullman, Washington, USA: Sook Jung, Stephen Ficklin, Dorrie Main. US Department of Energy Joint Genome Institute, Walnut Creek, California, USA: Shengqiang Shu, Jane Grimwood, Jerry Jenkins, Simon Prochnik, David M. Goodstein, Susan Lucas, Jeremy Schmutz, Daniel S. Rokhsar. Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Udine, Italy: Fabio Marroni, Guido Cipriani, Rachele Falchi, Raffaele Testolin, Giannina Vizzotto, Michele Morgante. HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA: Jane Grimwood, Jerry Jenkins, Jeremy Schmutz. Scuola Superiore Sant'Anna (SSSA), Pisa, Italy: Andrea Zuccolo, Erica Mica, Pietro Tonutti. Parco Tecnologico Padano, Lodi, Italy: Laura Rossini, Barbara Lazzari, Raul Pirona, Alessandra Stella, Francesco Salamini. Dipartimento di Scienze Agrarie e Ambientali-Produzione, Territorio, Agroenergia, Università degli Studi di Milano, Milano, Italy: Laura Rossini. Instituto de Nutrición y Tecnología de los Alimentos (INTA), Universidad de Chile, Santiago, Chile: Lee A. Meisel. Centro de Biotecnología Vegetal Facultad de Ciencias Biológicas, Universidad Andrés Bello, Santiago, Chile: Lee A. Meisel. Department of Horticultural Science, North Carolina State University, Raleigh, North Carolina, USA: Bryon Sosinski. Energy Biosciences Institute University of California, Berkeley, California, USA: Therese Mitros. Dipartimento di Matematica e Informatica, University of Udine, Udine, Italy: Alberto Policriti. Department of Fruit Tree and Woody Plant Sciences, University of Bologna, Bologna, Italy: Luca Dondini, Stefano Tartarini. School of Computing, Clemson University, Clemson, South Carolina, USA: Pengfei Xuan. Fondo de Investigación Avanzada en Áreas Prioritarias (FONDAP)-Center for Genome Regulation, Centro de Biotecnología Vegetal, Facultad de Ciencias Biológicas, Universidad Andres Bello, Santiago, Chile: Susana Gonzalez, Ariel Orellana. Dipartimento di Scienze Biomolecolari e Biotecnologie, Università degli Studi di Milano, Milano, Italy: David S. Horner. Laboratorio de Genómica Funcional y Bioinformática, Facultad de Ciencias Agronómicas, Universidad de Chile, La Pintana, Chile: Jonathan Maldonado, Herman Silva. School of Agricultural, Forest and Environmental Sciences, Clemson University, Clemson, South Carolina, USA: Douglas Bielenberg, Christina Wells. Istituto di Biologia e Biotecnologia Agraria, Consiglio Nazionale delle Ricerche (CNR), Lodi, Italy: Alessandra Stella. Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Centre de Recerca en Agrigenòmica Consejo Superior de Investigaciones Científicas (CSIC)-IRTA-Universitat Autònoma de Barcelona (UAB)-University of Barcelona (UB), Campus UAB, Bellaterra (Cerdanyola del Vallès), Barcelona, Spain: Pere Arús. Istituto Agrario San Michele all'Adige (IASMA), Research and Innovation Centre, Fondazione Edmund Mach, S. Michele all'Adige, Trento, Italy: Francesco Salamini Center for Integrative Genomics University of California, Berkeley, California, USA: Daniel S. Rokhsa. (literal)
Titolo
  • The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution (literal)
Abstract
  • Rosaceae is the most important fruit-producing clade, and its key commercially relevant genera (Fragaria, Rosa, Rubus and Prunus) show broadly diverse growth habits, fruit types and compact diploid genomes. Peach, a diploid Prunus species, is one of the best genetically characterized deciduous trees. Here we describe the high-quality genome sequence of peach obtained from a completely homozygous genotype. We obtained a complete chromosome-scale assembly using Sanger whole-genome shotgun methods. We predicted 27,852 protein-coding genes, as well as noncoding RNAs. We investigated the path of peach domestication through whole-genome resequencing of 14 Prunus accessions. The analyses suggest major genetic bottlenecks that have substantially shaped peach genome diversity. Furthermore, comparative analyses showed that peach has not undergone recent whole-genome duplication, and even though the ancestral triplicated blocks in peach are fragmentary compared to those in grape, all seven paleosets of paralogs from the putative paleoancestor are detectable. (literal)
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