ExpEdit: A webserver to explore human RNA editing in RNA-Seq experiments (Articolo in rivista)

Type
Label
  • ExpEdit: A webserver to explore human RNA editing in RNA-Seq experiments (Articolo in rivista) (literal)
Anno
  • 2011-01-01T00:00:00+01:00 (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#doi
  • 10.1093/bioinformatics/btr117 (literal)
Alternative label
  • Picardi, Ernesto; D'Antonio, Mattia; Carrabino, Danilo; Castrignanò, Tiziana; Pesole, Graziano (2011)
    ExpEdit: A webserver to explore human RNA editing in RNA-Seq experiments
    in Bioinformatics (Oxf., Print)
    (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#autori
  • Picardi, Ernesto; D'Antonio, Mattia; Carrabino, Danilo; Castrignanò, Tiziana; Pesole, Graziano (literal)
Pagina inizio
  • 1311 (literal)
Pagina fine
  • 1312 (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#url
  • http://www.scopus.com/record/display.url?eid=2-s2.0-79954542921&origin=inward (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#numeroVolume
  • 27 (literal)
Rivista
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#numeroFascicolo
  • 9 (literal)
Note
  • Scopu (literal)
  • ISI Web of Science (WOS) (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#affiliazioni
  • Universita degli Studi di Bari; Consorzio interuniversitario per le Applicazioni di Supercalcolo Per Universita e Ricerca; Consiglio Nazionale delle Ricerche (literal)
Titolo
  • ExpEdit: A webserver to explore human RNA editing in RNA-Seq experiments (literal)
Abstract
  • Summary: ExpEdit is a web application for assessing RNA editing in human at known or user-specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context. © The Author 2011. Published by Oxford University Press. All rights reserved. (literal)
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