Investigating truffle biology with the ESTuber database (Abstract/Poster in atti di convegno)

Type
Label
  • Investigating truffle biology with the ESTuber database (Abstract/Poster in atti di convegno) (literal)
Anno
  • 2006-01-01T00:00:00+01:00 (literal)
Alternative label
  • Lazzari B. 1,3, Caprera A.,2,3, Cosentino C. 1,4, Stella A.3, and Viotti A. 1 (2006)
    Investigating truffle biology with the ESTuber database
    in Convegno FISV, Gargnano
    (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#autori
  • Lazzari B. 1,3, Caprera A.,2,3, Cosentino C. 1,4, Stella A.3, and Viotti A. 1 (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#descrizioneSinteticaDelProdotto
  • The ESTuber database (http://www.itb.cnr.it/estuber) is an online resource including 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-house prepared cDNA library from truffle vegetative hyphae, and 882 sequences downloaded from GenBank from four libraries from mycelia and ascocarps at different developmental stages. An automated pipeline was implemented to perform sequence analysis and to fill a MySQL database in. The database can be queried via a PHP-based web interface. The ESTuber db was structured to be a repository of data obtained from EST sequence analysis and to provide links to related external resources. Three main interfaces were set up to browse the database, to retrieve significant data and correspondent external links and to download selected sequences and accessory information in different formats. Sequences in the database were assembled and annotated towards three different databases. A number of programs were used to extract features and give significance to rough sequences. To date, the ESTuber db is the most complete information repository for truffle EST sequences. (literal)
Http://www.cnr.it/ontology/cnr/pubblicazioni.owl#affiliazioni
  • 1 IBBA-CNR, Milano; 2 CISI, Segrate (MI);3 PTP, Lodi; 4 Darmstadt University of Technology, Institute of Botany, Darmstadt, Germany (literal)
Titolo
  • Investigating truffle biology with the ESTuber database (literal)
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